A performance model for the communication in fast multipole methods on high- performance computing platforms

H. Ibeid, R. Yokota, D.E. Keyes
International Journal of High Performance Computing Applications, 30, 423-437, (2016)

A performance model for the communication in fast multipole methods on high- performance computing platforms

Keywords

Fast multipole method, Communication complexity, Communication performance models

Abstract

Exascale systems are predicted to have approximately 1 billion cores, assuming gigahertz cores. Limitations on affordable network topologies for distributed memory systems of such massive scale bring new challenges to the currently dominant parallel programing model. Currently, there are many efforts to evaluate the hardware and software bottlenecks of exascale designs. It is therefore of interes t to model application performance and to understand what changes need to be made to ensure extrapolated scalability. The fast multipole method (FMM) was originally developed for accelerating N-body problems in astrophysics and molecular dynamics but has recently been extended to a wider range of problems. Its high arithmetic intensity combined with its linear complexity and asynchronous communication patterns make it a promising a lgorithm for exascale systems. In this paper, we discuss the challenges for FMM on current parallel computers and future exascale a rchitectures, with a focus on internode communication. We focus on the communication part only; the efficiency of the computational kernels are beyond the scope of the present study. We develop a performance model that considers the communication patterns of the FMM and observe a good match between our model and the actual communication time on four high-performance computing (HPC) systems, when latency, bandwidth, network topology, and multicore penalties are all taken into account. To our knowledge, this is the first formal characterization of internode communication in FMM that validates the model against actual measurements of communication time. The ultimate communication model is predictive in an absolute sense; however, on complex systems, this objective is often out of reach or of a difficulty out of proportion to its benefit when there exists a simpler model that is inexpens ive and sufficient to guide coding decisions leading to improved scaling. The current model provides such guidance.

Code

DOI: 10.1177/1094342016634819

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